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dc.contributor.authorPiechaud, Nils
dc.contributor.authorHunt, C
dc.contributor.authorCulverhouse, Phil
dc.contributor.authorFoster, Nicola
dc.contributor.authorHowell, Kerry
dc.date.accessioned2019-04-24T12:13:12Z
dc.date.available2019-04-24T12:13:12Z
dc.date.issued2019-04-18
dc.identifier.issn0171-8630
dc.identifier.issn1616-1599
dc.identifier.urihttp://hdl.handle.net/10026.1/13732
dc.description.abstract

Benthic ecosystems are chronically undersampled, particularly in environments >50 m depth. Yet a rising level of anthropogenic threats makes data collection ever more urgent. Currently, modern underwater sampling tools, particularly autonomous underwater vehicles (AUVs), are able to collect vast image data, but cannot bypass the bottleneck formed by manual image annotation. Computer vision (CV) offers a faster, more consistent, cost effective and sharable alternative to manual annotation. We used TensorFlow to evaluate the performance of the Inception V3 model with different numbers of training images, as well as assessing how many different classes (taxa) it could distinguish. Classifiers (models) were trained with increasing amounts of data (20 to 1000 images of each taxa) and increasing numbers of taxa (7 to 52). Maximum performance (0.78 sensitivity, 0.75 precision) was achieved using the maximum number of training images but little was gained in performance beyond 200 training images. Performance was also highest with the least classes in training. None of the classifiers had average performances high enough to be a suitable alternative to manual annotation. However, some classifiers performed well for individual taxa (0.95 sensitivity, 0.94 precision). Our results suggest this technology is currently best applied to specific taxa that can be reliably identified and where 200 training images offers a good compromise between performance and annotation effort. This demonstrates that CV could be routinely employed as a tool to study benthic ecology by non-specialists, which could lead to a major increase in data availability for conservation research and biodiversity management.

dc.format.extent15-30
dc.languageen
dc.language.isoen
dc.publisherInter Research
dc.subjectBenthic ecology
dc.subjectComputer vision
dc.subjectAutomated image analysis
dc.subjectAutomated species identification
dc.titleAutomated identification of benthic epifauna with computer vision
dc.typejournal-article
dc.typeJournal Article
plymouth.author-urlhttps://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000485723200002&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=11bb513d99f797142bcfeffcc58ea008
plymouth.volume615
plymouth.publication-statusPublished
plymouth.journalMarine Ecology Progress Series
dc.identifier.doi10.3354/meps12925
plymouth.organisational-group/Plymouth
plymouth.organisational-group/Plymouth/Faculty of Science and Engineering
plymouth.organisational-group/Plymouth/Faculty of Science and Engineering/School of Biological and Marine Sciences
plymouth.organisational-group/Plymouth/REF 2021 Researchers by UoA
plymouth.organisational-group/Plymouth/REF 2021 Researchers by UoA/UoA07 Earth Systems and Environmental Sciences
plymouth.organisational-group/Plymouth/Research Groups
plymouth.organisational-group/Plymouth/Research Groups/Marine Institute
plymouth.organisational-group/Plymouth/Users by role
plymouth.organisational-group/Plymouth/Users by role/Academics
plymouth.organisational-group/Plymouth/Users by role/Researchers in ResearchFish submission
dcterms.dateAccepted2019-03-06
dc.rights.embargodate2020-4-17
dc.identifier.eissn1616-1599
dc.rights.embargoperiodNot known
rioxxterms.versionofrecord10.3354/meps12925
rioxxterms.licenseref.urihttp://www.rioxx.net/licenses/all-rights-reserved
rioxxterms.licenseref.startdate2019-04-18
rioxxterms.typeJournal Article/Review
plymouth.funderInfluence of population connectivity on depth-dependent diversity of deep-sea marine benthic biota::NERC


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